PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000436t1
Common NameTCM_000436
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 355aa    MW: 37058.6 Da    PI: 5.0038
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000436t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1728.9e-23255317163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L +eN  L++el++l++e++kl+se+
  Thecc1EG000436t1 255 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVESLANENCNLRDELKKLSDECEKLTSEN 317
                       89***********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077778.2E-33194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.6E-7116223No hitNo description
Gene3DG3DSA:1.20.5.1702.9E-19250314No hitNo description
SMARTSM003381.5E-19255319IPR004827Basic-leucine zipper domain
PfamPF001701.4E-20255317IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.15257320IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.56E-11258314No hitNo description
CDDcd147029.33E-25260310No hitNo description
PROSITE patternPS000360262277IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGTEEESTPA KPSKPTASTQ EIPTTPSYPD WSSSIQAYYG AGATPPPFFA STVASPTPHP  60
YIWGGQHPLM PPYGTPVPYP AIYPPGGVYA HPNMATTPTS AQNNVDHEVK GTDGKDRGAT  120
KKSKGTSGSK VGESGKVASG SGNDGGSQSG ESGSEGTSDG SDENNQQELA AGKKGSFDQM  180
LADASAQSNT AGASQALVPG KPIVSMPATT LNIGMDLWSG SAAAAGAAKM RPNSSGAVAT  240
VAPGGVMPDQ WIQDERELKR QKRKQSNRES ARRSRLRKQA ECEELQARVE SLANENCNLR  300
DELKKLSDEC EKLTSENNSI KDELTRMCGP DALTDVEQDN PSSVLQSRGG EGNS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271277RRSRLRK
2271278RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047000.10.0G-box binding factor 1 isoform 1
SwissprotP427741e-120GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A061DGG50.0A0A061DGG5_THECC; G-box binding factor 1 isoform 1
STRINGPOPTR_0007s12460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72742643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-104G-box binding factor 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]